Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs72854873 chr11:11838912 C/A 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs72854884 chr11:11844532 T/A 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs72854892 chr11:11845351 C/G 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs72856306 chr11:11848869 T/C 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs72856318 chr11:11853655 A/G 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs72856320 chr11:11854657 C/T 9.45E-5 116 41.77 42.73 13.35 KM Plot
THYM rs7287616 chr22:23929852 C/T 8.74E-7 119 49.4 27.33 22.17 KM Plot
THYM rs72898824 chr6:85129113 A/G 0.000192 118 36.03 50.1 53.63 KM Plot
THYM rs72898828 chr6:85130011 T/C 0.000199 118 36.4 49.75 53.63 KM Plot
THYM rs72926717 chr2:177461119 G/A 5.19E-6 118 41.77 45.38 25.83 KM Plot
THYM rs7295307 chr12:58342775 G/A 7.46E-13 118 42.25 27.3 6 KM Plot
THYM rs73004648 chr3:147137674 A/G 0.000177 118 45.87 35 20.27 KM Plot
THYM rs73016459 chr6:163066323 C/A 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs73029061 chr19:29283980 T/A 5.12E-5 114 50.1 38.13 18.07 KM Plot
THYM rs73029067 chr19:29287815 A/C 6.64E-6 115 48 33.67 22.9 KM Plot